biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Packaged view
This page reorganizes the original catalog entry around fit, installability, and workflow context first. The original raw source lives below.
Install command
npx @skill-hub/cli install benchflow-ai-skillsbench-biopython
Repository
Skill path: registry/terminal_bench_2.0/full_batch_reviewed/terminal_bench_2_0_protein-assembly/environment/skills/biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Open repositoryBest for
Primary workflow: Ship Full Stack.
Technical facets: Full Stack, Backend.
Target audience: Development teams looking for install-ready agent workflows..
License: Unknown.
Original source
Catalog source: SkillHub Club.
Repository owner: benchflow-ai.
This is still a mirrored public skill entry. Review the repository before installing into production workflows.
What it helps with
- Install biopython into Claude Code, Codex CLI, Gemini CLI, or OpenCode workflows
- Review https://github.com/benchflow-ai/SkillsBench before adding biopython to shared team environments
- Use biopython for development workflows
Works across
Favorites: 0.
Sub-skills: 0.
Aggregator: No.