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pdb-database

This skill provides programmatic access to the RCSB Protein Data Bank for searching and downloading 3D molecular structures. It supports text, sequence, and structure similarity searches, file downloads in multiple formats, and metadata retrieval. The documentation includes extensive code examples for common structural biology workflows.

Packaged view

This page reorganizes the original catalog entry around fit, installability, and workflow context first. The original raw source lives below.

Stars
15,480
Hot score
99
Updated
March 20, 2026
Overall rating
A7.9
Composite score
6.7
Best-practice grade
N/A

Install command

npx @skill-hub/cli install k-dense-ai-claude-scientific-skills-pdb-database
structural-biologyprotein-databasebioinformaticsdata-retrievalscientific-research

Repository

K-Dense-AI/claude-scientific-skills

Skill path: scientific-skills/pdb-database

This skill provides programmatic access to the RCSB Protein Data Bank for searching and downloading 3D molecular structures. It supports text, sequence, and structure similarity searches, file downloads in multiple formats, and metadata retrieval. The documentation includes extensive code examples for common structural biology workflows.

Open repository

Best for

Primary workflow: Research & Ops.

Technical facets: Full Stack, Backend, Data / AI.

Target audience: Research teams looking for install-ready agent workflows..

License: Unknown.

Original source

Catalog source: SkillHub Club.

Repository owner: K-Dense-AI.

This is still a mirrored public skill entry. Review the repository before installing into production workflows.

What it helps with

  • Install pdb-database into Claude Code, Codex CLI, Gemini CLI, or OpenCode workflows
  • Review https://github.com/K-Dense-AI/claude-scientific-skills before adding pdb-database to shared team environments
  • Use pdb-database for research workflows

Works across

Claude CodeCodex CLIGemini CLIOpenCode

Favorites: 0.

Sub-skills: 0.

Aggregator: No.

pdb-database | SkillHub