spatial-transcriptomics-tutorials-with-omicverse
This skill provides guided access to spatial transcriptomics tutorials using the omicverse Python library. It walks users through preprocessing, cell deconvolution, and downstream analysis workflows for datasets like Visium and Slide-seq. The instructions include specific code examples for tasks like cell segmentation with Cellpose and spatial integration with STAligner.
Packaged view
This page reorganizes the original catalog entry around fit, installability, and workflow context first. The original raw source lives below.
Install command
npx @skill-hub/cli install starlitnightly-omicverse-spatial-tutorials
Repository
Skill path: .claude/skills/spatial-tutorials
This skill provides guided access to spatial transcriptomics tutorials using the omicverse Python library. It walks users through preprocessing, cell deconvolution, and downstream analysis workflows for datasets like Visium and Slide-seq. The instructions include specific code examples for tasks like cell segmentation with Cellpose and spatial integration with STAligner.
Open repositoryBest for
Primary workflow: Analyze Data & AI.
Technical facets: Data / AI, Integration.
Target audience: AI/ML teams looking for install-ready agent workflows..
License: Unknown.
Original source
Catalog source: SkillHub Club.
Repository owner: Starlitnightly.
This is still a mirrored public skill entry. Review the repository before installing into production workflows.
What it helps with
- Install spatial-transcriptomics-tutorials-with-omicverse into Claude Code, Codex CLI, Gemini CLI, or OpenCode workflows
- Review https://github.com/Starlitnightly/omicverse before adding spatial-transcriptomics-tutorials-with-omicverse to shared team environments
- Use spatial-transcriptomics-tutorials-with-omicverse for ai/ml workflows
Works across
Favorites: 0.
Sub-skills: 0.
Aggregator: No.